What tax deductions are available to medical practices?
Medical practices can deduct ordinary business expenses including staff wages, rent, equipment depreciation, supplies, malpractice insurance, CME, retirement plan contributions, and qualified business income (QBI) where eligible.
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Definition
A tax deduction is a business expense that reduces taxable income, governed by IRC Section 162 (ordinary and necessary business expenses) and related sections of the Internal Revenue Code.
The detail
Medical practices deduct expenses across several IRC categories. Section 162 covers ordinary and necessary business expenses: staff wages, rent, utilities, malpractice insurance, professional dues, CME, supplies, marketing, professional fees. Section 167 and 168 cover depreciation of equipment and improvements over MACRS recovery periods. Section 179 allows immediate expensing of qualifying equipment up to $2.5M for tax years beginning after Dec 31, 2024 (per OBBBA, Public Law 119-21, signed July 4, 2025), with a phase-out threshold of $4M; for tax year 2026, Rev. Proc. 2025-32 sets the inflation-indexed limits at $2.56M / $4.09M. Bonus depreciation under Section 168(k) is permanently reinstated at 100% for property acquired and placed in service after January 19, 2025 (reinstated by OBBBA). Retirement plan contributions under SEP, SIMPLE, 401(k), and defined benefit plans are deductible within IRS limits: for 2026 the defined contribution limit is $72,000 per participant, and a defined benefit plan can pay an annual benefit of up to $290,000, which is why cash balance contributions for older owners can run far higher. Section 199A QBI deduction can deduct up to 20 percent of qualified business income for pass-through entities, subject to specified service trade or business (SSTB) limitations on income above thresholds. OBBBA made the deduction permanent.
Section 179 expense limit is $2.5M for TY 2025 / $2.56M for TY 2026, with a phase-out threshold of $4M / $4.09M (OBBBA Public Law 119-21, signed July 4, 2025; TY 2026 amounts per IRS Rev. Proc. 2025-32).
Source: IRS Rev. Proc. 2025-32
Bonus depreciation under Section 168(k) is permanently reinstated at 100% for property acquired and placed in service after January 19, 2025 (per OBBBA).
Section 199A QBI deduction can be up to 20 percent of qualified business income for pass-through entities.
Source: IRS Section 199A
What this means for clinic owners
From Sorso
The biggest tax savings for medical practices usually come from retirement plans and equipment timing, not from finding obscure deductions. Sorso estimate: in Fidus Actuarial's 2026 illustration, a 60-year-old owner at the $360,000 compensation cap can contribute $382,466 a year to a combined cash balance and 401(k) profit sharing design; for an owner whose income stays in the 37 percent top federal bracket, that defers about $141,500 of federal income tax ($382,466 x 0.37), and less if part of the deduction falls in lower brackets.
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What is Section 179 for medical equipment?
Section 179 lets medical practices immediately expense up to $2.5M of qualifying equipment placed in service in the tax year (for tax years beginning after Dec 31, 2024, per OBBBA — Public Law 119-21, signed July 4, 2025; $2.56M for tax year 2026 per Rev. Proc. 2025-32), instead of depreciating it over multiple years.
What retirement plans work best for clinic owners?
The best retirement plans for clinic owners are a Solo 401(k) or SEP-IRA for solo practices (up to $72,000 for 2026, or $80,000 in a Solo 401(k) with the age-50 catch-up) and a 401(k) paired with a cash balance plan for high-earning partners, which Fidus Actuarial's 2026 illustrations put at about $252,000 a year at age 50 and $382,000 at age 60 for an owner at the $360,000 compensation cap.
What is the QBI deduction for healthcare?
The Section 199A Qualified Business Income (QBI) deduction allows a 20 percent deduction on qualified business income from pass-through entities, but it phases out for healthcare specified service trades or businesses (SSTB) above income thresholds ($403,500 MFJ for 2026 per IRS Rev. Proc. 2025-32).
Are healthcare practices specified service trades or businesses (SSTB)?
Yes. Under IRC Section 199A, the field of health is explicitly listed as an SSTB, including services performed by physicians, dentists, nurses, physical therapists, and similar healthcare professionals. SSTB status restricts the QBI deduction above income thresholds.
How do I structure a practice for tax efficiency?
A tax-efficient practice structure usually starts with an S corporation election for the clinical practice (held in a PC or PLLC where state law requires one) and a retirement plan sized to the owners' income, with a separate real estate LLC or MSO added for liability, financing or exit reasons. Those extra entities do not preserve the QBI deduction when the same owners hold 50 percent or more of both sides.
What records do I need to keep for an IRS audit?
Keep tax records for at least 3 years after filing (the general period of limitations), 6 years if you left out income of more than 25 percent of the gross income on the return, 4 years for employment tax records, and asset records until the limitations period ends for the year you dispose of the asset. Fraudulent or unfiled returns have no limit, HIPAA documentation must be kept 6 years, and medical record retention is set by state law.
Sources
- IRS: Working Families Tax Cuts (One Big Beautiful Bill), business provisions
- IRS Rev. Proc. 2025-32 (2026 inflation adjustments)
- IRS Publication 946: How to depreciate property
- IRS: Qualified business income deduction (Section 199A)
- IRS: COLA increases for dollar limitations on benefits and contributions
- Fidus Actuarial Solutions: Cash balance plan contribution limits for 2026
Founder of Sorso and a CFA charterholder. Before Sorso, Stan spent 19 years in corporate finance at institutions including UniCredit and Société Générale — managing a $450M loan portfolio and making senior partner at a major mezzanine lender by 29 — then built a fractional CFO firm exclusively for outpatient healthcare clinics.
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